This page contains eight vignettes, which cover a range of different
topics related to the use of
cyCombine for batch correction and
panel merging. Some vignettes also include extended discussions
of
the approaches. The article introducing cyCombine is published in Nature
Communications.
If you have any issues or questions regarding the use of cyCombine, please do not hesitate to raise an issue on GitHub. In this way, others may also benefit from the answers and discussions.
Reference manual |
Performance benchmarking |
Vignette for batch effect detection |
Vignette for panel merging module |
Vignette for pure CyTOF example |
Vignette for two-panel CyTOF example |
Vignette for spectral flow cytrometry and CyTOF integration |
Vignette for Spectral flow cytometry, CITE-seq, and CyTOF integration |
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